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When using these files in studies, please cite the data following the DataCite standard. And thanks to Zenodo and Figshare for hosting the data.

Gene / Protein ID mapping databases

Species BridgeDb Download Size DOI License
Anopheles gambiae Ag_Derby_Ensembl_Metazoa_39.bridge   (doi:10.5281/zenodo.3667670) license
Arabidopsis thaliana At_Derby_Ensembl_Plant_39.bridge   (doi:10.5281/zenodo.3667670) license
Bacillus subtilis Bs_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Bos taurus Bt_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Caenorhabditis elegans Ce_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Canis familiaris Cf_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Drosophila melanogaster Dm_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Danio rerio Dr_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Escherichia coli Ec_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Gallus gallus Gg_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Gibberella zeae Gz_Derby_Ensembl_Fungi_39.bridge   (doi:10.5281/zenodo.3667670) license
Homo sapiens Hs_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Mus musculus Mm_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Oryza japonica Oj_Derby_Ensembl_Plant_39.bridge   (doi:10.5281/zenodo.3667670) license
Pan troglodytes Pt_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Rattus norvegicus Rn_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Saccharomyces cerevisiae Sc_Derby_Ensembl_91.bridge   (doi:10.5281/zenodo.3667670) license
Zea mays Zm_Derby_Ensembl_Plant_39.bridge   (doi:10.5281/zenodo.3667670) license

Coronavirus gene/protein identifiers

Species BridgeDb Download Size DOI License
Human Coronaviruses humancorona-2020-05-27.bridge 2.1 MB (doi:10.5281/zenodo.3860798) CC0

Other ID mapping databases

type BridgeDb Download Size DOI License
Complexes complexes_20200510.bridge 8.28 MB (doi:10.6084/m9.figshare.12278810.v1) CC0
Interactions interactions20201120.bridge 14.56 MB (doi:10.6084/m9.figshare.13265078.v1) CC0
Metabolites metabolites_20201104.bridge 1.91 GB (doi:10.6084/m9.figshare.13187585.v1) CC0
Publications publications_20201121.bridge 22.54 MB (doi:10.6084/m9.figshare.13270523.v1) CC0