Metabolite Mapping Databases
These identifier mapping databases contain mappings for metabolites extracted from HMDB, ChEBI and Wikidata.
- Webpage: https://github.com/bridgedb/create-bridgedb-metabolites/blob/master/README.md
- Authors: Egon Willighagen (ORCID), Denise Slenter (ORCID)
- License: CCZero
- Mapping Sources: HMDB (version 20190116), ChEBI 180, Wikidata (2019-10-25)
- Source code: https://github.com/bridgedb/create-bridgedb-metabolites
- Issues: https://github.com/bridgedb/create-bridgedb-metabolites/issues
Releases
- 2020-08-09: metabolites_20200809.bridge (QC_report)
- Mapping sources: HMDB 4.0 (version April 2020), ChEBI 190, Wikidata (2020-08-09).
- Please cite using https://doi.org/10.6084/m9.figshare.12782264.v1
- 2020-06-10: metabolites_20200610.bridge (QC_report)
- Mapping sources: HMDB 4.0 (version April 2020), ChEBI 186, Wikidata (2020-06-10).
- Please cite using https://doi.org/10.6084/m9.figshare.12458612.v1
- 2020-04-13: metabolites_20200413.bridge (QC_report)
- Mapping sources: HMDB 4.0 (version April 2020), ChEBI 186, Wikidata (2020-04-13).
- Please cite using https://doi.org/10.6084/m9.figshare.12278132.v1
- 2019-10-25: metabolites_20191025.bridge (QC_report)
- Mapping sources: HMDB 4.0 (version 2019-01-16), ChEBI 180, Wikidata (2019-10-25).
- Please cite using https://doi.org/10.6084/m9.figshare.10048508.v1
- This work was funded by ELIXIR, the research infrastructure for life-science data.
- 2019-02-07: metabolites_20190509.bridge (QC_report)
- Mapping sources: HMDB 4.0 (version 2019-01-16), ChEBI 175, Wikidata (2019-05-09).
- Please cite using https://doi.org/10.6084/m9.figshare.8118692.v1
- Over 1600 more EPA CompTox, 5000 Wikidata, 4500 PubChem compound and almost 400 new LipidMaps identifiers supported.
- This work was funded by ELIXIR, the research infrastructure for life-science data.